python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.bam SAMstats-SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.bam SAMstats-SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.bam SAMstats-SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam SAMstats-SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
 python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL230_b17_ATAC_SpleenThymus.barcodes_annotated.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T166_b15_Liver_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T235_b15_Liver_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T275_b15_Liver_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T350_b15_Liver_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T375_b15_Liver_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T398_b15_Liver_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL211_b15_ATAC_LiverRedo.barcodes_annotated.T71_b15_Liver_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T238_b10_Stomach_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T269_b10_Stomach_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T303_b10_Esophagus_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T322_b10_Stomach_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T35_b10_Stomach_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T399_b10_Stomach_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL121_b10_ATAC_StomachEsophagus.barcodes_annotated.T53_b10_Stomach_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T10_b9_Muscle_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T123_b9_Muscle_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T161_b9_Muscle_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T377_b9_Muscle_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T44_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T61_b9_Muscle_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T87_b9_Muscle_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL113_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL114_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL115_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL116_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL117_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL118_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL119_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL120_b9_ATAC_muscle.barcodes_annotated.T96_b9_Muscle_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &