python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T109_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T109_b14_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T109_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T109_b14_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T11_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T11_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T11_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T11_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T178_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T178_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T178_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T178_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T187_b14_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T187_b14_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T187_b14_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T187_b14_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T408S_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T408S_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T408S_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T408S_b14_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T45_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T45_b14_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T45_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T45_b14_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T60_b14_Skin_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T60_b14_Skin_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T60_b14_Skin_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T60_b14_Skin_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T85_b14_Skin_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T85_b14_Skin_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T85_b14_Skin_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL187_b14_ATAC_Skin/SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip >  SL187_b14_ATAC_Skin.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T85_b14_Skin_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T106_b13_Eye_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T106_b13_Eye_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T106_b13_Eye_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T106_b13_Eye_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T180_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T180_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T180_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T180_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T186_b13_Eye_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T186_b13_Eye_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T186_b13_Eye_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T186_b13_Eye_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T410_b13_Eye_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T410_b13_Eye_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T410_b13_Eye_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T410_b13_Eye_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T51_b13_Eye_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T51_b13_Eye_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T51_b13_Eye_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T51_b13_Eye_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T5_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T5_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T5_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T5_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T79_b13_Eye_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T79_b13_Eye_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T79_b13_Eye_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL182_b13_ATAC_EyeRedo/SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL182_b13_ATAC_EyeRedo.230413_A00509_0706_BH5HMNDSX7.barcodes_annotated.barcode_T79_b13_Eye_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230224_A00509_0679_BHVCVJDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL159_b12_ATAC_LungRedo/SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL159_b12_ATAC_LungRedo.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T238_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T238_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T238_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T238_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T269_b10_Stomach_PCW18 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T269_b10_Stomach_PCW18 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T269_b10_Stomach_PCW18 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T269_b10_Stomach_PCW18 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T303_b10_Esophagus_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T303_b10_Esophagus_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T303_b10_Esophagus_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T303_b10_Esophagus_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T322_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T322_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T322_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T322_b10_Stomach_PCW21 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T35_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T35_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T35_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T35_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T399_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T399_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T399_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T399_b10_Stomach_PCW17 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T53_b10_Stomach_PCW20 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T53_b10_Stomach_PCW20 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end1.fastq.gz 2 barcode_T53_b10_Stomach_PCW20 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL122_b10_ATAC_StomachEsophagus/SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.end2.fastq.gz 2 barcode_T53_b10_Stomach_PCW20 2 -revcomp | gzip > SL122_b10_ATAC_StomachEsophagus.230413_A00509_0707_AH5HMLDSX7.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end2.fastq.gz