python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T40_b16_Adr_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T390_b16_Adr_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T318_b16_Adr_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T314_b16_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T273_b16_Adr_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T176_b16_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL261_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL262_b15_ATAC_AdrenalThyroidSpleen.T136_b16_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &