/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T235_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T275_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T350_b15_Liver_PCW21.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T375_b15_Liver_PCW15.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T398_b15_Liver_PCW17.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T71_b15_Liver_PCW18.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL219_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL220_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL222_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL223_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL224_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL225_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL226_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL227_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index SL228_b15_RNA_LiverRedo.T166_b15_Liver_PCW19.end1.hg38-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
 