python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T10_b9_Muscle_PCW19 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T10_b9_Muscle_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T123_b9_Muscle_PCW22 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T123_b9_Muscle_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T161_b9_Muscle_PCW10 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T161_b9_Muscle_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T377_b9_Muscle_PCW15 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T377_b9_Muscle_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T44_b9_Muscle_PCW17 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T44_b9_Muscle_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T61_b9_Muscle_PCW20 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T61_b9_Muscle_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T87_b9_Muscle_PCW18 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T87_b9_Muscle_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T96_b9_Muscle_PCW17 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T96_b9_Muscle_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T10_b9_Muscle_PCW19 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T10_b9_Muscle_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T123_b9_Muscle_PCW22 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T123_b9_Muscle_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T161_b9_Muscle_PCW10 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T161_b9_Muscle_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T377_b9_Muscle_PCW15 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T377_b9_Muscle_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T44_b9_Muscle_PCW17 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T44_b9_Muscle_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T61_b9_Muscle_PCW20 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T61_b9_Muscle_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T87_b9_Muscle_PCW18 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T87_b9_Muscle_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL270_b9_RNA_Muscle/SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T96_b9_Muscle_PCW17 2 -revcomp | gzip > SL270_b9_RNA_Muscle.230404_A00509_0701_BH3N5NDSX7.barcodes_annotated.RNA_UMI.barcode_T96_b9_Muscle_PCW17.end1.fastq.gz