python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T408S_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T178_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T187_b14_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T109_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T45_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T85_b14_Skin_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T11_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip > SL203_b14_RNA_Skin.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T60_b14_Skin_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T408S_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T178_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T178_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b14_Skin_PCW23 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T187_b14_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T109_b14_Skin_PCW17 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T109_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b14_Skin_PCW17 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T45_b14_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T85_b14_Skin_PCW18 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T85_b14_Skin_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b14_Skin_PCW19 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T11_b14_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py  /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL203_b14_RNA_Skin/SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T60_b14_Skin_PCW20 2 -revcomp | gzip > SL203_b14_RNA_Skin.230329_A00509_0697_BH3TLFDSX7.barcodes_annotated.RNA_UMI.barcode_T60_b14_Skin_PCW20.end1.fastq.gz