python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL242_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL242_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL243_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL243_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL244_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL244_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL242_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL242_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL243_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL243_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL244_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL244_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats