python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/Undetermined_S0_L001_R1_001.fastq.gz L1-0-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/Undetermined_S0_L001_R1_001.fastq.gz L1-0-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/Undetermined_S0_L001_R1_001.fastq.gz L1-0-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/Undetermined_S0_L001_R1_001.fastq.gz L1-0-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/Undetermined_S0_L001_R1_001.fastq.gz L1-0-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/Undetermined_S0_L001_R1_001.fastq.gz L1-0-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/Undetermined_S0_L001_R1_001.fastq.gz L1-0-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/Undetermined_S0_L001_R1_001.fastq.gz L1-0-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/Undetermined_S0_L001_R1_001.fastq.gz L1-0-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-0-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/Undetermined_S0_L001_R1_001.fastq.gz L1-1-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/Undetermined_S0_L001_R1_001.fastq.gz L1-1-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/Undetermined_S0_L001_R1_001.fastq.gz L1-1-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/Undetermined_S0_L001_R1_001.fastq.gz L1-1-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/Undetermined_S0_L001_R1_001.fastq.gz L1-1-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/Undetermined_S0_L001_R1_001.fastq.gz L1-1-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/Undetermined_S0_L001_R1_001.fastq.gz L1-1-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/Undetermined_S0_L001_R1_001.fastq.gz L1-1-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/Undetermined_S0_L001_R1_001.fastq.gz L1-1-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/Undetermined_S0_L001_R1_001.fastq.gz L1-1-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-1-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/Undetermined_S0_L001_R1_001.fastq.gz L1-2-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/Undetermined_S0_L001_R1_001.fastq.gz L1-2-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/Undetermined_S0_L001_R1_001.fastq.gz L1-2-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/Undetermined_S0_L001_R1_001.fastq.gz L1-2-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/Undetermined_S0_L001_R1_001.fastq.gz L1-2-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/Undetermined_S0_L001_R1_001.fastq.gz L1-2-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/Undetermined_S0_L001_R1_001.fastq.gz L1-2-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/Undetermined_S0_L001_R1_001.fastq.gz L1-2-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/Undetermined_S0_L001_R1_001.fastq.gz L1-2-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/Undetermined_S0_L001_R1_001.fastq.gz L1-2-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-2-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/Undetermined_S0_L001_R1_001.fastq.gz L1-3-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/Undetermined_S0_L001_R1_001.fastq.gz L1-3-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/Undetermined_S0_L001_R1_001.fastq.gz L1-3-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/Undetermined_S0_L001_R1_001.fastq.gz L1-3-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/Undetermined_S0_L001_R1_001.fastq.gz L1-3-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/Undetermined_S0_L001_R1_001.fastq.gz L1-3-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/Undetermined_S0_L001_R1_001.fastq.gz L1-3-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/Undetermined_S0_L001_R1_001.fastq.gz L1-3-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/Undetermined_S0_L001_R1_001.fastq.gz L1-3-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/Undetermined_S0_L001_R1_001.fastq.gz L1-3-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-3-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/Undetermined_S0_L001_R1_001.fastq.gz L1-4-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/Undetermined_S0_L001_R1_001.fastq.gz L1-4-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/Undetermined_S0_L001_R1_001.fastq.gz L1-4-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/Undetermined_S0_L001_R1_001.fastq.gz L1-4-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/Undetermined_S0_L001_R1_001.fastq.gz L1-4-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/Undetermined_S0_L001_R1_001.fastq.gz L1-4-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/Undetermined_S0_L001_R1_001.fastq.gz L1-4-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/Undetermined_S0_L001_R1_001.fastq.gz L1-4-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/Undetermined_S0_L001_R1_001.fastq.gz L1-4-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/Undetermined_S0_L001_R1_001.fastq.gz L1-4-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-4-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/Undetermined_S0_L001_R1_001.fastq.gz L1-5-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/Undetermined_S0_L001_R1_001.fastq.gz L1-5-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/Undetermined_S0_L001_R1_001.fastq.gz L1-5-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/Undetermined_S0_L001_R1_001.fastq.gz L1-5-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/Undetermined_S0_L001_R1_001.fastq.gz L1-5-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/Undetermined_S0_L001_R1_001.fastq.gz L1-5-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/Undetermined_S0_L001_R1_001.fastq.gz L1-5-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/Undetermined_S0_L001_R1_001.fastq.gz L1-5-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/Undetermined_S0_L001_R1_001.fastq.gz L1-5-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/Undetermined_S0_L001_R1_001.fastq.gz L1-5-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-5-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/Undetermined_S0_L001_R1_001.fastq.gz L1-6-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/Undetermined_S0_L001_R1_001.fastq.gz L1-6-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/Undetermined_S0_L001_R1_001.fastq.gz L1-6-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/Undetermined_S0_L001_R1_001.fastq.gz L1-6-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/Undetermined_S0_L001_R1_001.fastq.gz L1-6-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/Undetermined_S0_L001_R1_001.fastq.gz L1-6-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/Undetermined_S0_L001_R1_001.fastq.gz L1-6-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/Undetermined_S0_L001_R1_001.fastq.gz L1-6-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/Undetermined_S0_L001_R1_001.fastq.gz L1-6-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/Undetermined_S0_L001_R1_001.fastq.gz L1-6-9/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-6-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/Undetermined_S0_L001_R1_001.fastq.gz L1-7-0/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/Undetermined_S0_L001_R1_001.fastq.gz L1-7-1/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/Undetermined_S0_L001_R1_001.fastq.gz L1-7-2/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/Undetermined_S0_L001_R1_001.fastq.gz L1-7-3/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/Undetermined_S0_L001_R1_001.fastq.gz L1-7-4/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/Undetermined_S0_L001_R1_001.fastq.gz L1-7-5/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/Undetermined_S0_L001_R1_001.fastq.gz L1-7-6/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/Undetermined_S0_L001_R1_001.fastq.gz L1-7-7/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/Undetermined_S0_L001_R1_001.fastq.gz L1-7-8/Undetermined_S0_L001_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L1-7-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/Undetermined_S0_L002_R1_001.fastq.gz L2-0-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/Undetermined_S0_L002_R1_001.fastq.gz L2-0-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/Undetermined_S0_L002_R1_001.fastq.gz L2-0-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/Undetermined_S0_L002_R1_001.fastq.gz L2-0-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/Undetermined_S0_L002_R1_001.fastq.gz L2-0-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/Undetermined_S0_L002_R1_001.fastq.gz L2-0-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/Undetermined_S0_L002_R1_001.fastq.gz L2-0-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/Undetermined_S0_L002_R1_001.fastq.gz L2-0-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/Undetermined_S0_L002_R1_001.fastq.gz L2-0-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-0-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/Undetermined_S0_L002_R1_001.fastq.gz L2-1-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/Undetermined_S0_L002_R1_001.fastq.gz L2-1-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/Undetermined_S0_L002_R1_001.fastq.gz L2-1-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/Undetermined_S0_L002_R1_001.fastq.gz L2-1-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/Undetermined_S0_L002_R1_001.fastq.gz L2-1-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/Undetermined_S0_L002_R1_001.fastq.gz L2-1-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/Undetermined_S0_L002_R1_001.fastq.gz L2-1-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/Undetermined_S0_L002_R1_001.fastq.gz L2-1-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/Undetermined_S0_L002_R1_001.fastq.gz L2-1-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/Undetermined_S0_L002_R1_001.fastq.gz L2-1-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-1-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/Undetermined_S0_L002_R1_001.fastq.gz L2-2-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/Undetermined_S0_L002_R1_001.fastq.gz L2-2-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/Undetermined_S0_L002_R1_001.fastq.gz L2-2-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/Undetermined_S0_L002_R1_001.fastq.gz L2-2-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/Undetermined_S0_L002_R1_001.fastq.gz L2-2-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/Undetermined_S0_L002_R1_001.fastq.gz L2-2-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/Undetermined_S0_L002_R1_001.fastq.gz L2-2-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/Undetermined_S0_L002_R1_001.fastq.gz L2-2-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/Undetermined_S0_L002_R1_001.fastq.gz L2-2-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/Undetermined_S0_L002_R1_001.fastq.gz L2-2-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-2-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/Undetermined_S0_L002_R1_001.fastq.gz L2-3-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/Undetermined_S0_L002_R1_001.fastq.gz L2-3-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/Undetermined_S0_L002_R1_001.fastq.gz L2-3-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/Undetermined_S0_L002_R1_001.fastq.gz L2-3-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/Undetermined_S0_L002_R1_001.fastq.gz L2-3-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/Undetermined_S0_L002_R1_001.fastq.gz L2-3-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/Undetermined_S0_L002_R1_001.fastq.gz L2-3-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/Undetermined_S0_L002_R1_001.fastq.gz L2-3-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/Undetermined_S0_L002_R1_001.fastq.gz L2-3-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/Undetermined_S0_L002_R1_001.fastq.gz L2-3-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-3-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/Undetermined_S0_L002_R1_001.fastq.gz L2-4-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/Undetermined_S0_L002_R1_001.fastq.gz L2-4-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/Undetermined_S0_L002_R1_001.fastq.gz L2-4-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/Undetermined_S0_L002_R1_001.fastq.gz L2-4-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/Undetermined_S0_L002_R1_001.fastq.gz L2-4-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/Undetermined_S0_L002_R1_001.fastq.gz L2-4-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/Undetermined_S0_L002_R1_001.fastq.gz L2-4-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/Undetermined_S0_L002_R1_001.fastq.gz L2-4-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/Undetermined_S0_L002_R1_001.fastq.gz L2-4-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/Undetermined_S0_L002_R1_001.fastq.gz L2-4-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-4-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/Undetermined_S0_L002_R1_001.fastq.gz L2-5-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/Undetermined_S0_L002_R1_001.fastq.gz L2-5-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/Undetermined_S0_L002_R1_001.fastq.gz L2-5-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/Undetermined_S0_L002_R1_001.fastq.gz L2-5-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/Undetermined_S0_L002_R1_001.fastq.gz L2-5-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/Undetermined_S0_L002_R1_001.fastq.gz L2-5-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/Undetermined_S0_L002_R1_001.fastq.gz L2-5-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/Undetermined_S0_L002_R1_001.fastq.gz L2-5-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/Undetermined_S0_L002_R1_001.fastq.gz L2-5-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/Undetermined_S0_L002_R1_001.fastq.gz L2-5-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-5-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/Undetermined_S0_L002_R1_001.fastq.gz L2-6-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/Undetermined_S0_L002_R1_001.fastq.gz L2-6-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/Undetermined_S0_L002_R1_001.fastq.gz L2-6-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/Undetermined_S0_L002_R1_001.fastq.gz L2-6-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/Undetermined_S0_L002_R1_001.fastq.gz L2-6-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/Undetermined_S0_L002_R1_001.fastq.gz L2-6-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/Undetermined_S0_L002_R1_001.fastq.gz L2-6-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/Undetermined_S0_L002_R1_001.fastq.gz L2-6-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/Undetermined_S0_L002_R1_001.fastq.gz L2-6-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/Undetermined_S0_L002_R1_001.fastq.gz L2-6-9/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-6-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/Undetermined_S0_L002_R1_001.fastq.gz L2-7-0/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/Undetermined_S0_L002_R1_001.fastq.gz L2-7-1/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/Undetermined_S0_L002_R1_001.fastq.gz L2-7-2/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/Undetermined_S0_L002_R1_001.fastq.gz L2-7-3/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/Undetermined_S0_L002_R1_001.fastq.gz L2-7-4/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/Undetermined_S0_L002_R1_001.fastq.gz L2-7-5/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/Undetermined_S0_L002_R1_001.fastq.gz L2-7-6/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/Undetermined_S0_L002_R1_001.fastq.gz L2-7-7/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/Undetermined_S0_L002_R1_001.fastq.gz L2-7-8/Undetermined_S0_L002_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L2-7-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/Undetermined_S0_L003_R1_001.fastq.gz L3-0-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/Undetermined_S0_L003_R1_001.fastq.gz L3-0-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/Undetermined_S0_L003_R1_001.fastq.gz L3-0-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/Undetermined_S0_L003_R1_001.fastq.gz L3-0-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/Undetermined_S0_L003_R1_001.fastq.gz L3-0-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/Undetermined_S0_L003_R1_001.fastq.gz L3-0-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/Undetermined_S0_L003_R1_001.fastq.gz L3-0-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/Undetermined_S0_L003_R1_001.fastq.gz L3-0-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/Undetermined_S0_L003_R1_001.fastq.gz L3-0-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-0-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/Undetermined_S0_L003_R1_001.fastq.gz L3-1-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/Undetermined_S0_L003_R1_001.fastq.gz L3-1-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/Undetermined_S0_L003_R1_001.fastq.gz L3-1-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/Undetermined_S0_L003_R1_001.fastq.gz L3-1-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/Undetermined_S0_L003_R1_001.fastq.gz L3-1-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/Undetermined_S0_L003_R1_001.fastq.gz L3-1-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/Undetermined_S0_L003_R1_001.fastq.gz L3-1-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/Undetermined_S0_L003_R1_001.fastq.gz L3-1-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/Undetermined_S0_L003_R1_001.fastq.gz L3-1-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/Undetermined_S0_L003_R1_001.fastq.gz L3-1-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-1-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/Undetermined_S0_L003_R1_001.fastq.gz L3-2-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/Undetermined_S0_L003_R1_001.fastq.gz L3-2-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/Undetermined_S0_L003_R1_001.fastq.gz L3-2-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/Undetermined_S0_L003_R1_001.fastq.gz L3-2-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/Undetermined_S0_L003_R1_001.fastq.gz L3-2-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/Undetermined_S0_L003_R1_001.fastq.gz L3-2-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/Undetermined_S0_L003_R1_001.fastq.gz L3-2-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/Undetermined_S0_L003_R1_001.fastq.gz L3-2-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/Undetermined_S0_L003_R1_001.fastq.gz L3-2-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/Undetermined_S0_L003_R1_001.fastq.gz L3-2-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-2-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/Undetermined_S0_L003_R1_001.fastq.gz L3-3-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/Undetermined_S0_L003_R1_001.fastq.gz L3-3-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/Undetermined_S0_L003_R1_001.fastq.gz L3-3-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/Undetermined_S0_L003_R1_001.fastq.gz L3-3-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/Undetermined_S0_L003_R1_001.fastq.gz L3-3-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/Undetermined_S0_L003_R1_001.fastq.gz L3-3-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/Undetermined_S0_L003_R1_001.fastq.gz L3-3-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/Undetermined_S0_L003_R1_001.fastq.gz L3-3-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/Undetermined_S0_L003_R1_001.fastq.gz L3-3-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/Undetermined_S0_L003_R1_001.fastq.gz L3-3-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-3-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/Undetermined_S0_L003_R1_001.fastq.gz L3-4-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/Undetermined_S0_L003_R1_001.fastq.gz L3-4-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/Undetermined_S0_L003_R1_001.fastq.gz L3-4-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/Undetermined_S0_L003_R1_001.fastq.gz L3-4-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/Undetermined_S0_L003_R1_001.fastq.gz L3-4-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/Undetermined_S0_L003_R1_001.fastq.gz L3-4-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/Undetermined_S0_L003_R1_001.fastq.gz L3-4-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/Undetermined_S0_L003_R1_001.fastq.gz L3-4-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/Undetermined_S0_L003_R1_001.fastq.gz L3-4-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/Undetermined_S0_L003_R1_001.fastq.gz L3-4-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-4-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/Undetermined_S0_L003_R1_001.fastq.gz L3-5-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/Undetermined_S0_L003_R1_001.fastq.gz L3-5-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/Undetermined_S0_L003_R1_001.fastq.gz L3-5-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/Undetermined_S0_L003_R1_001.fastq.gz L3-5-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/Undetermined_S0_L003_R1_001.fastq.gz L3-5-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/Undetermined_S0_L003_R1_001.fastq.gz L3-5-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/Undetermined_S0_L003_R1_001.fastq.gz L3-5-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/Undetermined_S0_L003_R1_001.fastq.gz L3-5-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/Undetermined_S0_L003_R1_001.fastq.gz L3-5-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/Undetermined_S0_L003_R1_001.fastq.gz L3-5-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-5-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/Undetermined_S0_L003_R1_001.fastq.gz L3-6-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/Undetermined_S0_L003_R1_001.fastq.gz L3-6-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/Undetermined_S0_L003_R1_001.fastq.gz L3-6-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/Undetermined_S0_L003_R1_001.fastq.gz L3-6-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/Undetermined_S0_L003_R1_001.fastq.gz L3-6-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/Undetermined_S0_L003_R1_001.fastq.gz L3-6-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/Undetermined_S0_L003_R1_001.fastq.gz L3-6-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/Undetermined_S0_L003_R1_001.fastq.gz L3-6-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/Undetermined_S0_L003_R1_001.fastq.gz L3-6-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/Undetermined_S0_L003_R1_001.fastq.gz L3-6-9/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-6-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/Undetermined_S0_L003_R1_001.fastq.gz L3-7-0/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/Undetermined_S0_L003_R1_001.fastq.gz L3-7-1/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/Undetermined_S0_L003_R1_001.fastq.gz L3-7-2/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/Undetermined_S0_L003_R1_001.fastq.gz L3-7-3/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/Undetermined_S0_L003_R1_001.fastq.gz L3-7-4/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/Undetermined_S0_L003_R1_001.fastq.gz L3-7-5/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/Undetermined_S0_L003_R1_001.fastq.gz L3-7-6/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/Undetermined_S0_L003_R1_001.fastq.gz L3-7-7/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/Undetermined_S0_L003_R1_001.fastq.gz L3-7-8/Undetermined_S0_L003_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L3-7-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/Undetermined_S0_L004_R1_001.fastq.gz L4-0-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/Undetermined_S0_L004_R1_001.fastq.gz L4-0-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/Undetermined_S0_L004_R1_001.fastq.gz L4-0-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/Undetermined_S0_L004_R1_001.fastq.gz L4-0-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/Undetermined_S0_L004_R1_001.fastq.gz L4-0-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/Undetermined_S0_L004_R1_001.fastq.gz L4-0-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/Undetermined_S0_L004_R1_001.fastq.gz L4-0-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/Undetermined_S0_L004_R1_001.fastq.gz L4-0-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/Undetermined_S0_L004_R1_001.fastq.gz L4-0-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-0-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/Undetermined_S0_L004_R1_001.fastq.gz L4-1-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/Undetermined_S0_L004_R1_001.fastq.gz L4-1-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/Undetermined_S0_L004_R1_001.fastq.gz L4-1-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/Undetermined_S0_L004_R1_001.fastq.gz L4-1-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/Undetermined_S0_L004_R1_001.fastq.gz L4-1-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/Undetermined_S0_L004_R1_001.fastq.gz L4-1-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/Undetermined_S0_L004_R1_001.fastq.gz L4-1-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/Undetermined_S0_L004_R1_001.fastq.gz L4-1-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/Undetermined_S0_L004_R1_001.fastq.gz L4-1-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/Undetermined_S0_L004_R1_001.fastq.gz L4-1-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-1-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/Undetermined_S0_L004_R1_001.fastq.gz L4-2-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/Undetermined_S0_L004_R1_001.fastq.gz L4-2-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/Undetermined_S0_L004_R1_001.fastq.gz L4-2-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/Undetermined_S0_L004_R1_001.fastq.gz L4-2-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/Undetermined_S0_L004_R1_001.fastq.gz L4-2-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/Undetermined_S0_L004_R1_001.fastq.gz L4-2-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/Undetermined_S0_L004_R1_001.fastq.gz L4-2-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/Undetermined_S0_L004_R1_001.fastq.gz L4-2-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/Undetermined_S0_L004_R1_001.fastq.gz L4-2-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/Undetermined_S0_L004_R1_001.fastq.gz L4-2-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-2-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/Undetermined_S0_L004_R1_001.fastq.gz L4-3-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/Undetermined_S0_L004_R1_001.fastq.gz L4-3-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/Undetermined_S0_L004_R1_001.fastq.gz L4-3-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/Undetermined_S0_L004_R1_001.fastq.gz L4-3-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/Undetermined_S0_L004_R1_001.fastq.gz L4-3-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/Undetermined_S0_L004_R1_001.fastq.gz L4-3-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/Undetermined_S0_L004_R1_001.fastq.gz L4-3-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/Undetermined_S0_L004_R1_001.fastq.gz L4-3-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/Undetermined_S0_L004_R1_001.fastq.gz L4-3-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/Undetermined_S0_L004_R1_001.fastq.gz L4-3-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-3-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/Undetermined_S0_L004_R1_001.fastq.gz L4-4-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/Undetermined_S0_L004_R1_001.fastq.gz L4-4-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/Undetermined_S0_L004_R1_001.fastq.gz L4-4-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/Undetermined_S0_L004_R1_001.fastq.gz L4-4-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/Undetermined_S0_L004_R1_001.fastq.gz L4-4-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/Undetermined_S0_L004_R1_001.fastq.gz L4-4-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/Undetermined_S0_L004_R1_001.fastq.gz L4-4-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/Undetermined_S0_L004_R1_001.fastq.gz L4-4-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/Undetermined_S0_L004_R1_001.fastq.gz L4-4-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/Undetermined_S0_L004_R1_001.fastq.gz L4-4-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-4-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/Undetermined_S0_L004_R1_001.fastq.gz L4-5-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/Undetermined_S0_L004_R1_001.fastq.gz L4-5-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/Undetermined_S0_L004_R1_001.fastq.gz L4-5-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/Undetermined_S0_L004_R1_001.fastq.gz L4-5-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/Undetermined_S0_L004_R1_001.fastq.gz L4-5-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/Undetermined_S0_L004_R1_001.fastq.gz L4-5-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/Undetermined_S0_L004_R1_001.fastq.gz L4-5-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/Undetermined_S0_L004_R1_001.fastq.gz L4-5-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/Undetermined_S0_L004_R1_001.fastq.gz L4-5-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/Undetermined_S0_L004_R1_001.fastq.gz L4-5-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-5-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/Undetermined_S0_L004_R1_001.fastq.gz L4-6-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/Undetermined_S0_L004_R1_001.fastq.gz L4-6-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/Undetermined_S0_L004_R1_001.fastq.gz L4-6-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/Undetermined_S0_L004_R1_001.fastq.gz L4-6-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/Undetermined_S0_L004_R1_001.fastq.gz L4-6-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/Undetermined_S0_L004_R1_001.fastq.gz L4-6-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/Undetermined_S0_L004_R1_001.fastq.gz L4-6-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/Undetermined_S0_L004_R1_001.fastq.gz L4-6-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/Undetermined_S0_L004_R1_001.fastq.gz L4-6-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-8/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/Undetermined_S0_L004_R1_001.fastq.gz L4-6-9/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-6-9/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/Undetermined_S0_L004_R1_001.fastq.gz L4-7-0/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-0/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/Undetermined_S0_L004_R1_001.fastq.gz L4-7-1/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-1/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/Undetermined_S0_L004_R1_001.fastq.gz L4-7-2/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-2/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/Undetermined_S0_L004_R1_001.fastq.gz L4-7-3/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-3/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/Undetermined_S0_L004_R1_001.fastq.gz L4-7-4/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-4/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/Undetermined_S0_L004_R1_001.fastq.gz L4-7-5/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-5/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/Undetermined_S0_L004_R1_001.fastq.gz L4-7-6/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-6/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/Undetermined_S0_L004_R1_001.fastq.gz L4-7-7/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-7/
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/Undetermined_S0_L004_R1_001.fastq.gz L4-7-8/Undetermined_S0_L004_R2_001.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -prefix L4-7-8/