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/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 20 --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 36 --runfolder-dir /oak/stanford/groups/wjg/seqruns/230315_A00509_0687_BH2YMVDSX7 --tiles s_[4]_[0-9][0-9][6][9] --output-dir ./L4-6-9 --stats-dir bcl2fastq-stats --reports-dir bcl2fastq-reports --sample-sheet /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2021-01-30-NextSeq-run-2/SampleSheet-SHARE-seq.csv
/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 20 --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 36 --runfolder-dir /oak/stanford/groups/wjg/seqruns/230315_A00509_0687_BH2YMVDSX7 --tiles s_[4]_[0-9][0-9][7][9] --output-dir ./L4-7-9 --stats-dir bcl2fastq-stats --reports-dir bcl2fastq-reports --sample-sheet /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2021-01-30-NextSeq-run-2/SampleSheet-SHARE-seq.csv
/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 20 --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 36 --runfolder-dir /oak/stanford/groups/wjg/seqruns/230315_A00509_0687_BH2YMVDSX7 --tiles s_[4]_[0-9][0-9][8][9] --output-dir ./L4-8-9 --stats-dir bcl2fastq-stats --reports-dir bcl2fastq-reports --sample-sheet /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2021-01-30-NextSeq-run-2/SampleSheet-SHARE-seq.csv
/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 20 --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 36 --runfolder-dir /oak/stanford/groups/wjg/seqruns/230315_A00509_0687_BH2YMVDSX7 --tiles s_[4]_[0-9][0-9][9][9] --output-dir ./L4-9-9 --stats-dir bcl2fastq-stats --reports-dir bcl2fastq-reports --sample-sheet /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2021-01-30-NextSeq-run-2/SampleSheet-SHARE-seq.csv