python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL145_b11_ATAC_HeartRedo/SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL145_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL146_b11_ATAC_HeartRedo/SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL146_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL147_b11_ATAC_HeartRedo/SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL147_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL148_b11_ATAC_HeartRedo/SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL148_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL149_b11_ATAC_HeartRedo/SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL149_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL150_b11_ATAC_HeartRedo/SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL150_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL151_b11_ATAC_HeartRedo/SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL151_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL152_b11_ATAC_HeartRedo/SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > SL152_b11_ATAC_HeartRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL153_b12_ATAC_LungRedo/SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL153_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL154_b12_ATAC_LungRedo/SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL154_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL155_b12_ATAC_LungRedo/SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL155_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL156_b12_ATAC_LungRedo/SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL156_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL157_b12_ATAC_LungRedo/SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL157_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL158_b12_ATAC_LungRedo/SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > SL158_b12_ATAC_LungRedo.230209_A00509_0675_BHVGYYDSX5.barcodes_annotated.barcode_T408L_b12_Lung_PCW19.end2.fastq.gz