python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T014_b11_Heart_PCW.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T032_b11_Heart_PCW12.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T104_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T30_b11_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T361_b11_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T379_b11_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T407_b11_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL145_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL146_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL147_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL148_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL149_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL150_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL151_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL152_b11_ATAC_HeartRedo.T92_b11_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T286_b12_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T132_b12_lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T107_b12_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T256_b12_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T408L_b12_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T226_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T304_b12_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL153_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL154_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL155_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL156_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL157_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL158_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL159_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL160_b12_ATAC_LungRedo.T164_b12_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &