python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM.bam SAMstats-SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam SAMstats-SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T391_b8_Heart_PCW13.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T379_b8_Heart_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T104_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T30_b8_Heart_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T92_b8_Heart_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T407_b8_Heart_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.T361_b8_Heart_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL97_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL98_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL99_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL100_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL101_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL102_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL103_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL104_b8_ATAC_heart.FT014_HLHS_Engreitz.2x36mers.hg38.unique.BC_dedup.bam -addBC &