python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python ~/code/plotting/scatterplot.py BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 BL198_SHAREseq_A549_p53_RNA_1_3.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 BL199_SHAREseq_A549_p53_RNA_1_4.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 BL200_SHAREseq_A549_p53_RNA_2_1.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 BL201_SHAREseq_A549_p53_RNA_2_2.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &