python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM.bam SAMstats-SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM.bam SAMstats-SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.chrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam SAMstats-SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam SAMstats-SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM.py --- SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_286_b1_Lung_PCW14.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_174_b2_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_256_b1_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_77_b2_Lung_PCW18.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_408L_b1_Lung_PCW19.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_49_b2_Lung_PCW20.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_157_b1_Lung_PCW10.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_333_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_381_b1_Lung_PCW15.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_304_b2_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_107_b1_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_125_b2_Lung_PCW22.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_226_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_198_b2_Lung_PCW23.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL1_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL2_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL3_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL4_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL5_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL6_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL7_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL8_b1_ATAC_lung.T_304_b1_Lung_PCW21.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL9_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL10_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL11_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL12_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL13_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL14_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL15_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_dedup-V2.py SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes SL16_b2_ATAC_lung.T_24_b2_Lung_PCW17.2x36mers.hg38.unique.BC_dedup.bam -addBC &