python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_286_b1_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_174_b2_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_256_b1_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_77_b2_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_408L_b1_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_49_b2_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_157_b1_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_333_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_381_b1_Lung_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_304_b2_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_107_b1_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_125_b2_Lung_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_226_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_198_b2_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL17_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL17_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL17_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL18_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL18_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL18_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL19_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL19_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL19_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL20_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL20_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL20_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL21_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL21_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL21_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL22_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL22_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL22_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL23_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL23_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL23_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL24_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL24_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL24_b1_RNA_lung.T_304_b1_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL25_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL25_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL25_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL26_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL26_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL26_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL27_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL27_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL27_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL28_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL28_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL28_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL29_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL29_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL29_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL30_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL30_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL30_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL31_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL31_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL31_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL32_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL32_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL32_b2_RNA_lung.T_24_b2_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse