python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq0 Undetermined.chunks.end2.fastq0 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -0
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq1 Undetermined.chunks.end2.fastq1 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -1
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq10 Undetermined.chunks.end2.fastq10 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -10
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq100 Undetermined.chunks.end2.fastq100 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -100
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq101 Undetermined.chunks.end2.fastq101 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -101
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq102 Undetermined.chunks.end2.fastq102 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -102
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq103 Undetermined.chunks.end2.fastq103 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -103
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq104 Undetermined.chunks.end2.fastq104 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -104
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq105 Undetermined.chunks.end2.fastq105 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -105
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq106 Undetermined.chunks.end2.fastq106 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -106
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq107 Undetermined.chunks.end2.fastq107 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -107
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq108 Undetermined.chunks.end2.fastq108 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -108
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq109 Undetermined.chunks.end2.fastq109 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -109
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq11 Undetermined.chunks.end2.fastq11 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -11
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq110 Undetermined.chunks.end2.fastq110 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -110
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq111 Undetermined.chunks.end2.fastq111 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -111
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq112 Undetermined.chunks.end2.fastq112 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -112
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq113 Undetermined.chunks.end2.fastq113 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -113
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq114 Undetermined.chunks.end2.fastq114 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -114
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq115 Undetermined.chunks.end2.fastq115 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -115
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq116 Undetermined.chunks.end2.fastq116 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -116
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq117 Undetermined.chunks.end2.fastq117 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -117
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq118 Undetermined.chunks.end2.fastq118 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -118
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq119 Undetermined.chunks.end2.fastq119 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -119
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq12 Undetermined.chunks.end2.fastq12 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -12
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq120 Undetermined.chunks.end2.fastq120 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -120
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq121 Undetermined.chunks.end2.fastq121 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -121
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq122 Undetermined.chunks.end2.fastq122 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -122
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq123 Undetermined.chunks.end2.fastq123 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -123
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq124 Undetermined.chunks.end2.fastq124 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -124
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq125 Undetermined.chunks.end2.fastq125 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -125
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq126 Undetermined.chunks.end2.fastq126 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -126
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq127 Undetermined.chunks.end2.fastq127 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -127
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq128 Undetermined.chunks.end2.fastq128 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -128
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq129 Undetermined.chunks.end2.fastq129 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -129
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq13 Undetermined.chunks.end2.fastq13 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -13
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq130 Undetermined.chunks.end2.fastq130 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -130
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq131 Undetermined.chunks.end2.fastq131 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -131
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq132 Undetermined.chunks.end2.fastq132 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -132
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq133 Undetermined.chunks.end2.fastq133 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -133
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq134 Undetermined.chunks.end2.fastq134 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -134
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq135 Undetermined.chunks.end2.fastq135 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -135
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq136 Undetermined.chunks.end2.fastq136 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -136
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq137 Undetermined.chunks.end2.fastq137 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -137
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq138 Undetermined.chunks.end2.fastq138 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -138
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq139 Undetermined.chunks.end2.fastq139 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -139
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq14 Undetermined.chunks.end2.fastq14 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -14
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq140 Undetermined.chunks.end2.fastq140 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -140
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq141 Undetermined.chunks.end2.fastq141 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -141
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq142 Undetermined.chunks.end2.fastq142 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -142
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq143 Undetermined.chunks.end2.fastq143 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -143
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq144 Undetermined.chunks.end2.fastq144 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -144
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq145 Undetermined.chunks.end2.fastq145 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -145
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq146 Undetermined.chunks.end2.fastq146 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -146
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq147 Undetermined.chunks.end2.fastq147 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -147
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq148 Undetermined.chunks.end2.fastq148 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -148
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq149 Undetermined.chunks.end2.fastq149 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -149
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq15 Undetermined.chunks.end2.fastq15 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -15
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq150 Undetermined.chunks.end2.fastq150 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -150
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq151 Undetermined.chunks.end2.fastq151 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -151
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq152 Undetermined.chunks.end2.fastq152 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -152
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq153 Undetermined.chunks.end2.fastq153 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -153
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq154 Undetermined.chunks.end2.fastq154 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -154
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq155 Undetermined.chunks.end2.fastq155 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -155
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq156 Undetermined.chunks.end2.fastq156 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -156
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq157 Undetermined.chunks.end2.fastq157 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -157
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq158 Undetermined.chunks.end2.fastq158 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -158
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq159 Undetermined.chunks.end2.fastq159 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -159
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq16 Undetermined.chunks.end2.fastq16 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -16
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq160 Undetermined.chunks.end2.fastq160 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -160
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq161 Undetermined.chunks.end2.fastq161 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -161
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq162 Undetermined.chunks.end2.fastq162 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -162
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq163 Undetermined.chunks.end2.fastq163 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -163
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq164 Undetermined.chunks.end2.fastq164 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -164
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq165 Undetermined.chunks.end2.fastq165 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -165
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq166 Undetermined.chunks.end2.fastq166 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -166
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq167 Undetermined.chunks.end2.fastq167 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -167
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq168 Undetermined.chunks.end2.fastq168 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -168
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq169 Undetermined.chunks.end2.fastq169 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -169
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq17 Undetermined.chunks.end2.fastq17 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -17
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq170 Undetermined.chunks.end2.fastq170 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -170
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq171 Undetermined.chunks.end2.fastq171 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -171
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq172 Undetermined.chunks.end2.fastq172 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -172
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq173 Undetermined.chunks.end2.fastq173 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -173
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq174 Undetermined.chunks.end2.fastq174 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -174
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq175 Undetermined.chunks.end2.fastq175 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -175
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq176 Undetermined.chunks.end2.fastq176 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -176
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq177 Undetermined.chunks.end2.fastq177 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -177
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq178 Undetermined.chunks.end2.fastq178 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -178
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq179 Undetermined.chunks.end2.fastq179 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -179
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq18 Undetermined.chunks.end2.fastq18 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -18
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq180 Undetermined.chunks.end2.fastq180 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -180
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq181 Undetermined.chunks.end2.fastq181 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -181
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq182 Undetermined.chunks.end2.fastq182 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -182
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq183 Undetermined.chunks.end2.fastq183 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -183
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq184 Undetermined.chunks.end2.fastq184 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -184
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq185 Undetermined.chunks.end2.fastq185 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -185
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq186 Undetermined.chunks.end2.fastq186 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -186
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq187 Undetermined.chunks.end2.fastq187 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -187
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq188 Undetermined.chunks.end2.fastq188 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -188
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq189 Undetermined.chunks.end2.fastq189 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -189
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq19 Undetermined.chunks.end2.fastq19 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -19
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq190 Undetermined.chunks.end2.fastq190 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -190
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq191 Undetermined.chunks.end2.fastq191 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -191
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq192 Undetermined.chunks.end2.fastq192 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -192
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq193 Undetermined.chunks.end2.fastq193 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -193
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq194 Undetermined.chunks.end2.fastq194 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -194
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq195 Undetermined.chunks.end2.fastq195 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -195
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq196 Undetermined.chunks.end2.fastq196 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -196
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq197 Undetermined.chunks.end2.fastq197 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -197
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq198 Undetermined.chunks.end2.fastq198 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -198
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq199 Undetermined.chunks.end2.fastq199 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -199
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq2 Undetermined.chunks.end2.fastq2 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -2
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq20 Undetermined.chunks.end2.fastq20 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -20
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq200 Undetermined.chunks.end2.fastq200 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -200
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq201 Undetermined.chunks.end2.fastq201 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -201
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq202 Undetermined.chunks.end2.fastq202 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -202
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq203 Undetermined.chunks.end2.fastq203 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -203
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq204 Undetermined.chunks.end2.fastq204 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -204
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq205 Undetermined.chunks.end2.fastq205 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -205
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq206 Undetermined.chunks.end2.fastq206 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -206
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq207 Undetermined.chunks.end2.fastq207 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -207
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq208 Undetermined.chunks.end2.fastq208 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -208
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq209 Undetermined.chunks.end2.fastq209 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -209
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq21 Undetermined.chunks.end2.fastq21 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -21
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq210 Undetermined.chunks.end2.fastq210 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -210
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq211 Undetermined.chunks.end2.fastq211 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -211
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq212 Undetermined.chunks.end2.fastq212 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -212
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq213 Undetermined.chunks.end2.fastq213 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -213
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq214 Undetermined.chunks.end2.fastq214 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -214
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq215 Undetermined.chunks.end2.fastq215 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -215
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq216 Undetermined.chunks.end2.fastq216 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -216
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq217 Undetermined.chunks.end2.fastq217 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -217
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq218 Undetermined.chunks.end2.fastq218 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -218
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq219 Undetermined.chunks.end2.fastq219 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -219
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq22 Undetermined.chunks.end2.fastq22 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -22
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq220 Undetermined.chunks.end2.fastq220 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -220
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq221 Undetermined.chunks.end2.fastq221 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -221
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq222 Undetermined.chunks.end2.fastq222 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -222
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq223 Undetermined.chunks.end2.fastq223 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -223
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq224 Undetermined.chunks.end2.fastq224 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -224
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq225 Undetermined.chunks.end2.fastq225 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -225
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq226 Undetermined.chunks.end2.fastq226 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -226
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq227 Undetermined.chunks.end2.fastq227 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -227
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq228 Undetermined.chunks.end2.fastq228 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -228
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq229 Undetermined.chunks.end2.fastq229 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -229
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq23 Undetermined.chunks.end2.fastq23 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -23
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq230 Undetermined.chunks.end2.fastq230 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -230
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq231 Undetermined.chunks.end2.fastq231 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -231
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq232 Undetermined.chunks.end2.fastq232 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -232
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq233 Undetermined.chunks.end2.fastq233 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -233
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq234 Undetermined.chunks.end2.fastq234 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -234
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq235 Undetermined.chunks.end2.fastq235 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -235
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq236 Undetermined.chunks.end2.fastq236 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -236
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq237 Undetermined.chunks.end2.fastq237 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -237
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq238 Undetermined.chunks.end2.fastq238 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -238
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq239 Undetermined.chunks.end2.fastq239 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -239
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq24 Undetermined.chunks.end2.fastq24 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -24
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq240 Undetermined.chunks.end2.fastq240 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -240
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq241 Undetermined.chunks.end2.fastq241 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -241
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq242 Undetermined.chunks.end2.fastq242 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -242
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq243 Undetermined.chunks.end2.fastq243 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -243
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq244 Undetermined.chunks.end2.fastq244 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -244
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq245 Undetermined.chunks.end2.fastq245 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -245
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq246 Undetermined.chunks.end2.fastq246 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -246
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq247 Undetermined.chunks.end2.fastq247 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -247
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq248 Undetermined.chunks.end2.fastq248 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -248
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq249 Undetermined.chunks.end2.fastq249 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -249
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq25 Undetermined.chunks.end2.fastq25 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -25
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq250 Undetermined.chunks.end2.fastq250 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -250
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq251 Undetermined.chunks.end2.fastq251 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -251
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq252 Undetermined.chunks.end2.fastq252 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -252
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq253 Undetermined.chunks.end2.fastq253 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -253
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq254 Undetermined.chunks.end2.fastq254 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -254
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq255 Undetermined.chunks.end2.fastq255 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -255
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq256 Undetermined.chunks.end2.fastq256 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -256
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq257 Undetermined.chunks.end2.fastq257 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -257
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq258 Undetermined.chunks.end2.fastq258 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -258
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq259 Undetermined.chunks.end2.fastq259 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -259
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq26 Undetermined.chunks.end2.fastq26 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -26
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq260 Undetermined.chunks.end2.fastq260 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -260
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq261 Undetermined.chunks.end2.fastq261 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -261
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq262 Undetermined.chunks.end2.fastq262 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -262
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq263 Undetermined.chunks.end2.fastq263 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -263
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq264 Undetermined.chunks.end2.fastq264 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -264
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq265 Undetermined.chunks.end2.fastq265 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -265
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq266 Undetermined.chunks.end2.fastq266 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -266
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq267 Undetermined.chunks.end2.fastq267 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -267
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq268 Undetermined.chunks.end2.fastq268 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -268
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq269 Undetermined.chunks.end2.fastq269 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -269
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq27 Undetermined.chunks.end2.fastq27 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -27
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq270 Undetermined.chunks.end2.fastq270 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -270
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq271 Undetermined.chunks.end2.fastq271 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -271
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq272 Undetermined.chunks.end2.fastq272 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -272
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq273 Undetermined.chunks.end2.fastq273 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -273
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq274 Undetermined.chunks.end2.fastq274 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -274
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq275 Undetermined.chunks.end2.fastq275 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -275
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq276 Undetermined.chunks.end2.fastq276 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -276
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq277 Undetermined.chunks.end2.fastq277 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -277
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq278 Undetermined.chunks.end2.fastq278 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -278
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq279 Undetermined.chunks.end2.fastq279 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -279
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq28 Undetermined.chunks.end2.fastq28 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -28
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq280 Undetermined.chunks.end2.fastq280 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -280
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq281 Undetermined.chunks.end2.fastq281 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -281
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq282 Undetermined.chunks.end2.fastq282 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -282
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq283 Undetermined.chunks.end2.fastq283 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -283
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq284 Undetermined.chunks.end2.fastq284 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -284
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq285 Undetermined.chunks.end2.fastq285 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -285
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq286 Undetermined.chunks.end2.fastq286 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -286
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq287 Undetermined.chunks.end2.fastq287 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -287
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq288 Undetermined.chunks.end2.fastq288 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -288
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq289 Undetermined.chunks.end2.fastq289 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -289
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq29 Undetermined.chunks.end2.fastq29 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -29
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq290 Undetermined.chunks.end2.fastq290 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -290
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq291 Undetermined.chunks.end2.fastq291 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -291
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq292 Undetermined.chunks.end2.fastq292 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -292
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq293 Undetermined.chunks.end2.fastq293 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -293
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq294 Undetermined.chunks.end2.fastq294 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -294
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq295 Undetermined.chunks.end2.fastq295 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -295
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq296 Undetermined.chunks.end2.fastq296 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -296
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq297 Undetermined.chunks.end2.fastq297 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -297
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq298 Undetermined.chunks.end2.fastq298 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -298
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq299 Undetermined.chunks.end2.fastq299 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -299
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq3 Undetermined.chunks.end2.fastq3 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -3
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq30 Undetermined.chunks.end2.fastq30 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -30
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq300 Undetermined.chunks.end2.fastq300 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -300
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq301 Undetermined.chunks.end2.fastq301 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -301
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq302 Undetermined.chunks.end2.fastq302 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -302
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq303 Undetermined.chunks.end2.fastq303 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -303
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq304 Undetermined.chunks.end2.fastq304 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -304
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq305 Undetermined.chunks.end2.fastq305 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -305
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq306 Undetermined.chunks.end2.fastq306 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -306
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq307 Undetermined.chunks.end2.fastq307 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -307
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq308 Undetermined.chunks.end2.fastq308 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -308
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq309 Undetermined.chunks.end2.fastq309 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -309
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq31 Undetermined.chunks.end2.fastq31 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -31
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq310 Undetermined.chunks.end2.fastq310 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -310
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq311 Undetermined.chunks.end2.fastq311 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -311
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq312 Undetermined.chunks.end2.fastq312 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -312
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq313 Undetermined.chunks.end2.fastq313 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -313
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq314 Undetermined.chunks.end2.fastq314 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -314
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq315 Undetermined.chunks.end2.fastq315 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -315
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq316 Undetermined.chunks.end2.fastq316 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -316
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq317 Undetermined.chunks.end2.fastq317 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -317
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq318 Undetermined.chunks.end2.fastq318 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -318
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq319 Undetermined.chunks.end2.fastq319 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -319
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq32 Undetermined.chunks.end2.fastq32 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -32
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq320 Undetermined.chunks.end2.fastq320 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -320
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq321 Undetermined.chunks.end2.fastq321 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -321
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq322 Undetermined.chunks.end2.fastq322 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -322
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq323 Undetermined.chunks.end2.fastq323 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -323
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq324 Undetermined.chunks.end2.fastq324 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -324
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq325 Undetermined.chunks.end2.fastq325 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -325
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq326 Undetermined.chunks.end2.fastq326 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -326
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq327 Undetermined.chunks.end2.fastq327 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -327
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq328 Undetermined.chunks.end2.fastq328 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -328
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq329 Undetermined.chunks.end2.fastq329 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -329
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq33 Undetermined.chunks.end2.fastq33 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -33
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq330 Undetermined.chunks.end2.fastq330 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -330
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq331 Undetermined.chunks.end2.fastq331 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -331
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq332 Undetermined.chunks.end2.fastq332 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -332
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq333 Undetermined.chunks.end2.fastq333 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -333
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq334 Undetermined.chunks.end2.fastq334 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -334
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq335 Undetermined.chunks.end2.fastq335 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -335
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq336 Undetermined.chunks.end2.fastq336 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -336
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq337 Undetermined.chunks.end2.fastq337 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -337
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq338 Undetermined.chunks.end2.fastq338 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -338
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq339 Undetermined.chunks.end2.fastq339 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -339
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq34 Undetermined.chunks.end2.fastq34 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -34
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq340 Undetermined.chunks.end2.fastq340 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -340
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq341 Undetermined.chunks.end2.fastq341 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -341
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq342 Undetermined.chunks.end2.fastq342 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -342
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq343 Undetermined.chunks.end2.fastq343 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -343
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq344 Undetermined.chunks.end2.fastq344 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -344
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq345 Undetermined.chunks.end2.fastq345 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -345
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq346 Undetermined.chunks.end2.fastq346 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -346
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq347 Undetermined.chunks.end2.fastq347 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -347
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq348 Undetermined.chunks.end2.fastq348 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -348
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq349 Undetermined.chunks.end2.fastq349 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -349
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq35 Undetermined.chunks.end2.fastq35 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -35
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq350 Undetermined.chunks.end2.fastq350 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -350
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq351 Undetermined.chunks.end2.fastq351 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -351
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq352 Undetermined.chunks.end2.fastq352 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -352
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq353 Undetermined.chunks.end2.fastq353 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -353
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq354 Undetermined.chunks.end2.fastq354 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -354
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq355 Undetermined.chunks.end2.fastq355 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -355
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq356 Undetermined.chunks.end2.fastq356 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -356
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq357 Undetermined.chunks.end2.fastq357 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -357
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq358 Undetermined.chunks.end2.fastq358 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -358
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq359 Undetermined.chunks.end2.fastq359 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -359
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq36 Undetermined.chunks.end2.fastq36 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -36
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq360 Undetermined.chunks.end2.fastq360 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -360
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq361 Undetermined.chunks.end2.fastq361 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -361
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq362 Undetermined.chunks.end2.fastq362 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -362
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq363 Undetermined.chunks.end2.fastq363 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -363
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq364 Undetermined.chunks.end2.fastq364 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -364
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq365 Undetermined.chunks.end2.fastq365 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -365
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq366 Undetermined.chunks.end2.fastq366 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -366
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq367 Undetermined.chunks.end2.fastq367 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -367
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq368 Undetermined.chunks.end2.fastq368 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -368
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq369 Undetermined.chunks.end2.fastq369 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -369
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq37 Undetermined.chunks.end2.fastq37 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -37
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq370 Undetermined.chunks.end2.fastq370 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -370
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq371 Undetermined.chunks.end2.fastq371 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -371
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq372 Undetermined.chunks.end2.fastq372 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -372
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq373 Undetermined.chunks.end2.fastq373 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -373
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq374 Undetermined.chunks.end2.fastq374 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -374
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq375 Undetermined.chunks.end2.fastq375 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -375
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq376 Undetermined.chunks.end2.fastq376 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -376
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq377 Undetermined.chunks.end2.fastq377 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -377
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq378 Undetermined.chunks.end2.fastq378 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -378
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq379 Undetermined.chunks.end2.fastq379 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -379
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq38 Undetermined.chunks.end2.fastq38 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -38
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq380 Undetermined.chunks.end2.fastq380 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -380
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq381 Undetermined.chunks.end2.fastq381 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -381
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq382 Undetermined.chunks.end2.fastq382 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -382
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq383 Undetermined.chunks.end2.fastq383 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -383
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq384 Undetermined.chunks.end2.fastq384 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -384
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq385 Undetermined.chunks.end2.fastq385 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -385
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq386 Undetermined.chunks.end2.fastq386 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -386
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq387 Undetermined.chunks.end2.fastq387 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -387
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq388 Undetermined.chunks.end2.fastq388 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -388
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq389 Undetermined.chunks.end2.fastq389 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -389
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq39 Undetermined.chunks.end2.fastq39 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -39
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq390 Undetermined.chunks.end2.fastq390 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -390
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq391 Undetermined.chunks.end2.fastq391 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -391
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq392 Undetermined.chunks.end2.fastq392 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -392
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq393 Undetermined.chunks.end2.fastq393 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -393
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq394 Undetermined.chunks.end2.fastq394 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -394
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq395 Undetermined.chunks.end2.fastq395 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -395
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq396 Undetermined.chunks.end2.fastq396 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -396
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq397 Undetermined.chunks.end2.fastq397 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -397
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq398 Undetermined.chunks.end2.fastq398 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -398
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq399 Undetermined.chunks.end2.fastq399 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -399
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq4 Undetermined.chunks.end2.fastq4 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -4
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq40 Undetermined.chunks.end2.fastq40 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -40
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq400 Undetermined.chunks.end2.fastq400 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -400
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq401 Undetermined.chunks.end2.fastq401 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -401
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq402 Undetermined.chunks.end2.fastq402 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -402
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq403 Undetermined.chunks.end2.fastq403 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -403
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq404 Undetermined.chunks.end2.fastq404 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -404
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq405 Undetermined.chunks.end2.fastq405 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -405
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq406 Undetermined.chunks.end2.fastq406 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -406
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq407 Undetermined.chunks.end2.fastq407 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -407
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq408 Undetermined.chunks.end2.fastq408 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -408
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq409 Undetermined.chunks.end2.fastq409 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -409
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq41 Undetermined.chunks.end2.fastq41 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -41
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq410 Undetermined.chunks.end2.fastq410 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -410
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq411 Undetermined.chunks.end2.fastq411 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -411
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq412 Undetermined.chunks.end2.fastq412 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -412
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq413 Undetermined.chunks.end2.fastq413 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -413
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq414 Undetermined.chunks.end2.fastq414 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -414
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq415 Undetermined.chunks.end2.fastq415 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -415
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq416 Undetermined.chunks.end2.fastq416 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -416
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq417 Undetermined.chunks.end2.fastq417 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -417
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq418 Undetermined.chunks.end2.fastq418 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -418
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq419 Undetermined.chunks.end2.fastq419 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -419
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq42 Undetermined.chunks.end2.fastq42 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -42
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq420 Undetermined.chunks.end2.fastq420 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -420
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq43 Undetermined.chunks.end2.fastq43 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -43
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq44 Undetermined.chunks.end2.fastq44 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -44
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq45 Undetermined.chunks.end2.fastq45 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -45
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq46 Undetermined.chunks.end2.fastq46 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -46
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq47 Undetermined.chunks.end2.fastq47 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -47
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq48 Undetermined.chunks.end2.fastq48 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -48
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq49 Undetermined.chunks.end2.fastq49 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -49
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq5 Undetermined.chunks.end2.fastq5 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -5
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq50 Undetermined.chunks.end2.fastq50 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -50
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq51 Undetermined.chunks.end2.fastq51 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -51
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq52 Undetermined.chunks.end2.fastq52 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -52
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq53 Undetermined.chunks.end2.fastq53 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -53
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq54 Undetermined.chunks.end2.fastq54 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -54
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq55 Undetermined.chunks.end2.fastq55 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -55
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq56 Undetermined.chunks.end2.fastq56 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -56
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq57 Undetermined.chunks.end2.fastq57 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -57
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq58 Undetermined.chunks.end2.fastq58 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -58
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq59 Undetermined.chunks.end2.fastq59 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -59
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq6 Undetermined.chunks.end2.fastq6 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -6
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq60 Undetermined.chunks.end2.fastq60 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -60
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq61 Undetermined.chunks.end2.fastq61 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -61
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq62 Undetermined.chunks.end2.fastq62 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -62
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq63 Undetermined.chunks.end2.fastq63 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -63
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq64 Undetermined.chunks.end2.fastq64 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -64
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq65 Undetermined.chunks.end2.fastq65 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -65
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq66 Undetermined.chunks.end2.fastq66 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -66
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq67 Undetermined.chunks.end2.fastq67 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -67
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq68 Undetermined.chunks.end2.fastq68 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -68
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq69 Undetermined.chunks.end2.fastq69 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -69
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq7 Undetermined.chunks.end2.fastq7 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -7
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq70 Undetermined.chunks.end2.fastq70 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -70
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq71 Undetermined.chunks.end2.fastq71 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -71
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq72 Undetermined.chunks.end2.fastq72 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -72
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq73 Undetermined.chunks.end2.fastq73 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -73
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq74 Undetermined.chunks.end2.fastq74 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -74
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq75 Undetermined.chunks.end2.fastq75 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -75
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq76 Undetermined.chunks.end2.fastq76 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -76
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq77 Undetermined.chunks.end2.fastq77 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -77
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq78 Undetermined.chunks.end2.fastq78 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -78
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq79 Undetermined.chunks.end2.fastq79 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -79
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq8 Undetermined.chunks.end2.fastq8 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -8
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq80 Undetermined.chunks.end2.fastq80 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -80
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq81 Undetermined.chunks.end2.fastq81 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -81
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq82 Undetermined.chunks.end2.fastq82 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -82
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq83 Undetermined.chunks.end2.fastq83 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -83
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq84 Undetermined.chunks.end2.fastq84 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -84
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq85 Undetermined.chunks.end2.fastq85 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -85
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq86 Undetermined.chunks.end2.fastq86 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -86
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq87 Undetermined.chunks.end2.fastq87 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -87
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq88 Undetermined.chunks.end2.fastq88 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -88
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq89 Undetermined.chunks.end2.fastq89 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -89
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq9 Undetermined.chunks.end2.fastq9 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -9
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq90 Undetermined.chunks.end2.fastq90 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -90
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq91 Undetermined.chunks.end2.fastq91 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -91
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq92 Undetermined.chunks.end2.fastq92 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -92
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq93 Undetermined.chunks.end2.fastq93 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -93
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq94 Undetermined.chunks.end2.fastq94 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -94
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq95 Undetermined.chunks.end2.fastq95 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -95
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq96 Undetermined.chunks.end2.fastq96 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -96
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq97 Undetermined.chunks.end2.fastq97 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -97
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq98 Undetermined.chunks.end2.fastq98 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -98
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined.chunks.end1.fastq99 Undetermined.chunks.end2.fastq99 | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix -99