python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L1-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L1-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L1-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L1-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L1-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L1-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L1-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L1-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L1-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L1-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L1-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L1-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L1-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L1-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L1-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L1-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L1-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L1-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L1-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L1-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L1-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L1-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L1-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L1-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L1-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L1-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L1-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L1-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L1-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L1-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L1-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L1-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L2-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L2-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L2-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L2-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L2-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L2-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L2-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L2-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L2-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L2-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L2-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L2-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L2-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L2-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L2-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L2-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L2-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L2-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L2-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L2-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L2-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L2-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L2-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L2-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L2-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L2-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L2-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L2-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L2-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L2-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L2-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L2-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L3-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L3-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L3-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L3-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L3-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L3-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L3-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L3-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L3-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L3-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L3-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L3-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L3-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L3-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L3-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L3-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L3-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L3-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L3-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L3-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L3-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L3-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L3-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L3-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L3-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L3-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L3-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L3-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L3-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L3-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L3-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L3-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-0-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-0-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-0-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-0-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-0-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-0-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-0-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-0-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-0-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-0-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-0-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-0-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-0-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-0-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-0-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-0-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-1-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-1-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-1-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-1-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-1-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-1-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-1-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-1-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-1-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-1-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-1-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-1-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-1-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-1-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-1-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-1-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-2-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-2-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-2-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-2-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-2-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-2-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-2-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-2-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-2-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-2-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-2-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-2-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-2-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-2-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-2-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-2-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-3-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-3-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-3-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-3-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-3-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-3-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-3-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-3-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-3-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-3-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-3-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-3-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-3-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-3-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-3-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-3-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-4-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-4-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-4-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-4-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-4-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-4-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-4-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-4-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-4-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-4-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-4-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-4-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-4-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-4-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-4-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-4-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-5-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-5-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-5-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-5-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-5-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-5-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-5-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-5-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-5-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-5-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-5-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-5-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-5-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-5-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-5-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-5-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-6-9/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-6-9/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-6-9/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-6-9/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-6-9/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-6-9/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-6-9/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-6-9/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-6-9/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-6-9/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-6-9/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-6-9/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-6-9/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-6-9/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-6-9/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-6-9/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-0/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-0/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-0/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-0/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-0/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-0/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-0/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-0/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-0/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-0/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-0/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-0/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-0/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-0/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-0/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-0/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-1/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-1/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-1/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-1/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-1/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-1/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-1/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-1/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-1/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-1/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-1/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-1/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-1/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-1/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-1/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-1/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-2/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-2/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-2/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-2/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-2/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-2/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-2/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-2/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-2/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-2/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-2/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-2/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-2/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-2/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-2/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-2/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-3/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-3/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-3/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-3/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-3/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-3/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-3/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-3/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-3/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-3/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-3/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-3/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-3/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-3/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-3/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-3/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-4/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-4/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-4/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-4/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-4/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-4/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-4/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-4/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-4/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-4/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-4/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-4/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-4/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-4/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-4/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-4/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-5/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-5/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-5/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-5/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-5/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-5/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-5/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-5/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-5/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-5/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-5/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-5/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-5/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-5/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-5/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-5/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-6/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-6/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-6/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-6/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-6/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-6/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-6/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-6/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-6/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-6/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-6/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-6/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-6/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-6/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-6/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-6/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-7/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-7/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-7/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-7/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-7/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-7/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-7/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-7/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-7/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-7/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-7/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-7/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-7/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-7/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-7/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-7/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end1.fastq.gz L4-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated ; gzip L4-7-8/SK-L346-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end1.fastq.gz L4-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated ; gzip L4-7-8/SK-L347-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end1.fastq.gz L4-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated ; gzip L4-7-8/SK-L348-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end1.fastq.gz L4-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated ; gzip L4-7-8/SK-L349-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end1.fastq.gz L4-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated ; gzip L4-7-8/SK-L350-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end1.fastq.gz L4-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated ; gzip L4-7-8/SK-L351-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end1.fastq.gz L4-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated ; gzip L4-7-8/SK-L352-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end1.fastq.gz L4-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated ; gzip L4-7-8/SK-L353-SHARE-ATAC-FrontalCortex_Cerebellum_Testes_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end1.fastq.gz L4-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated ; gzip L4-7-8/SK-L354-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end1.fastq.gz L4-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated ; gzip L4-7-8/SK-L355-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_9.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end1.fastq.gz L4-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated ; gzip L4-7-8/SK-L356-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_10.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end1.fastq.gz L4-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated ; gzip L4-7-8/SK-L357-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_11.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end1.fastq.gz L4-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated ; gzip L4-7-8/SK-L358-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_12.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end1.fastq.gz L4-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated ; gzip L4-7-8/SK-L359-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_13.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end1.fastq.gz L4-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated ; gzip L4-7-8/SK-L360-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_14.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end1.fastq.gz L4-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated ; gzip L4-7-8/SK-L361-SHARE-RNA-FrontalCortex_Cerebellum_Testes_RNA_20k_15.barcodes_annotated.end*.fastq